So I'd been playing in 1.5.2 with the Soartex Fanver texture pack, and have come to realize I just can't live without it. I converted it with the tool provided by Mojang, and while it worked, a few textures that worked in 1.5.2 are not working properly in the converted version.
So far, broken textures I've found:
Pumpkin face (the other non-face sides work, though)
Flowing water, such as waterfalls (still water is fine)
There might be more, but I haven't found them yet, been too busy building a mob grinder on my SMP server. Any suggestions in how to fix?
You haven't told us exactly what is wrong. Are there pink and black checkered patterns on the blocks? In that case, you have a problem with your animation files. Are the textures not showing up, or showing up as default? Then you don't have the files named right.